Week |
Lecture Topic |
Assigned Readings |
Assignments & Deadlines |
1
(Jan 16th, 2020) |
- Course Introduction
- Introduction to Big Data
- DARPA XDATA Program - Overview Slides
- Breakout Groups on Big Data
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- Tika in Action, Chapter 1
- Mattmann, Chris. A vision for data science. Nature, Vol. 493, No. 7433, pp. 473-475, January 24, 2013.
- Lynch, Clifford. "Big data: How do your data grow?." Nature 455.7209 (2008): 28-29.
- Howe, Doug, et al. "Big data: The future of biocuration." Nature 455.7209 (2008): 47-50.(Presentation by: Henry Jiao)
- Wigan, Marcus R., and Roger Clarke. "Big data's big unintended consequences." Computer 46.6 (2013): 46-53.
- Schwartz, J. A. N. A., et al. "Measuring the value of Big Data exploitation systems: Quantitative, non-subjective metrics with the user as a key component." Parsons Journal for Information Mapping 6 (2014): 1-12.(Presentation by: Hanzhe Zhao)
- Sotera Defense Solutions. A Survey of Big Data Methods, Assessments, and Approaches. November 2012
- De Mauro, Andrea, Marco Greco, and Michele Grimaldi. "What is big data? A consensual definition and a review of key research topics." AIP conference proceedings. Vol. 1644. No. 1. AIP, 2015. (Presentation by: Anand Ravi)
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Resources:
- DARPA I2O (DARPA Dan) Video
- Zero Dark Thirty Workbench Video
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2
(Jan 23rd, 2020) |
- Report out from Big Data Breakouts
- A Taxonomy of File Formats
- Content Detection Libraries
- Language Bindings for Apache Tika
- Individual Student Presentations - Week 1 Papers
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- Tika in Action, Chapter 2
- Crocker, David. RFC 822 "Standard for the format of ARPA Internet text messages." (1982).(Presentation by: Zhikun Han)
- Freed, Ned and Nathaniel Borenstein. RFC 1341. MIME (Multipurpose Internet Mail Extensions). Mechanisms for Specifying and Describing
the Format of Internet Message Bodies. June 1992.
- Freed, Ned, and Nathaniel Borenstein. RFC 2045. Multipurpose internet mail extensions (MIME) part one: Format of internet message bodies. 1996.(Presentation by: Fabian Dietrich )
- Freed, Ned, and Nathaniel Borenstein. RFC 2046 Multipurpose internet mail extensions (MIME) part two: Media types, November, 1996.
- Freed, Ned. RFC 2048 "Multipurpose internet mail extensions (MIME) part four: Registration procedures." ISI (1996).
- Hicks, Ben J., et al. "Organizing and managing personal electronic files: A mechanical engineer's perspective." ACM Transactions on Information Systems (TOIS) 26.4 (2008): 23.
- Shim, Jungwon Roy. "Arium: Beyond the Desktop Metaphor: A new way of navigating, searching, and organizing personal digital data." Masters Thesus, Carnegie Mellon University (2012).
- Crowder, Jerome, Jonathan Marion, and Michele Reilly. "File Naming in Digital Media Research: Examples from the Humanities and Social Sciences." Journal of Librarianship and Scholarly Communication 3.3 (2015).
- Jackson, Andrew N. "Formats over time: Exploring UK web history." arXiv preprint arXiv:1210.1714 (2012). (Presentation by: Chen Cai)
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3
(Jan 30th, 2020) |
- Report outs from the in class discussion around classifying files and the MIME taxonomy
- Document Similarity and Deduplication
- Individual Presentations - Week 2 Papers
- Individual Presentations - Finish Week 1 (Anand Ravi)
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- Tika in Action, Chapter 3
- Bik, Elisabeth M., Casadevall, Arturo, Fang, Ferrie C. The Prevalence of Inappropriate Image Duplication in Biomedical Research Publications.(Presentation by: David May)
- Manku, Gurmeet Singh, Arvind Jain, and Anish Das Sarma. "Detecting near-duplicates for web crawling." Proceedings of the 16th international conference on World Wide Web. ACM, 2007.
- Henzinger, Monika. "Finding near-duplicate web pages: a large-scale evaluation of algorithms." Proceedings of the 29th annual international ACM SIGIR conference on Research and development in information retrieval. ACM, 2006.(Presented by: Alyssa Ishigo)
- Cooper, Matthew, Jonathan Foote, and Andreas Girgensohn. "Automatically organizing digital photographs using time and content." Image Processing, 2003. ICIP 2003. Proceedings. 2003 International Conference on. Vol. 3. IEEE, 2003.(Presentation by: Amirhossein Forouzani)
- Manber, Udi. "Finding similar files in a large file system." Usenix Winter. Vol. 94. 1994.
- Chim, Hung, and Xiaotie Deng. "Efficient phrase-based document similarity for clustering." IEEE Transactions on Knowledge and Data Engineering 20.9 (2008): 1217-1229.
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Resources:
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4
(Feb 6th, 2020) |
- Remaining presentations from last week (if any)
- Document Type Detection
- Individual Presentations - Week 3 papers
- Advanced File System Statistics and Understanding
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- Tika in Action, Chapter 4
- Amirani, Mehdi Chehel, Mohsen Toorani, and A. Beheshti. A new approach to content-based file type detection. Computers and Communications, 2008. ISCC 2008. IEEE Symposium on. IEEE, 2008 (Presented by: Junteng Zheng)
- McDaniel, Mason, and M. Hossain Heydari. Content based file type detection algorithms. System Sciences, 2003. Proceedings of the 36th Annual Hawaii International Conference on. IEEE, 2003.
- Alamri, Nasser S., and William H. Allen. "A comparative study of file-type identification techniques." SoutheastCon 2015. IEEE, 2015.(Presentation by: Linlin Sun)
- Li, Wei-Jen, et al. "Fileprints: Identifying file types by n-gram analysis." Information Assurance Workshop, 2005. IAW'05. Proceedings from the Sixth Annual IEEE SMC. IEEE, 2005.(Presentation by: Matthew Lee)
- Shahi, Ashim. "Classifying the classifiers for file fragment classification." Masters Thesis, Universiteit van Amsterdam (2012).
- Ahmed, Irfan, et al. "Fast file-type identification." Proceedings of the 2010 ACM Symposium on Applied Computing. ACM, 2010.
- Pierris, Georgios, and Stilianos Vidalis. "Forensically classifying files using HSOM algorithms." Emerging Intelligent Data and Web Technologies (EIDWT), 2012 Third International Conference on. IEEE, 2012.
- Harris, Ryan M. "Using artificial neural networks for forensic file type identification." Master's Thesis, Purdue University (2007).
- Douceur, John R., and William J. Bolosky. A large-scale study of file-system contents. ACM SIGMETRICS Performance Evaluation Review 27.1 (1999): 59-70.
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Resources:
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5
(Feb 13th, 2020) |
- Introduction to Assignment 1
- Content Extraction
- Individual Presentations - Week 4 papers
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- Tika in Action, Chapter 5
- Kilicoglu, Halil, et al. "Semantic MEDLINE: a web application for managing the results of PubMed Searches." Proceedings of the third international symposium for semantic mining in biomedicine. Vol. 2008. 2008.(Presentation by: Carlin Cherry )
- Kobayashi, Mei, and Koichi Takeda. "Information retrieval on the web." ACM Computing Surveys (CSUR) 32.2 (2000): 144-173. (Presentation by: Fumiko Uehara)
- Voorhees, Ellen M., and Donna Harman. "Overview of the sixth text retrieval conference (TREC-6)." Information Processing & Management 36.1 (2000): 3-35.
- Arasu, Arvind, and Hector Garcia-Molina. Extracting structured data from web pages. Proceedings of the 2003 ACM SIGMOD international conference on Management of data. ACM, 2003.
- Lewandowski, Dirk. "Web searching, search engines and Information Retrieval." Information Services & Use 25.3, 4 (2005): 137-147.
- Weninger, Tim, William H. Hsu, and Jiawei Han. "CETR: content extraction via tag ratios." Proceedings of the 19th international conference on World wide web. ACM, 2010. (Presentation by: Na Li )
- Karpathy, Andrej, and Li Fei-Fei. "Deep visual-semantic alignments for generating image descriptions." Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition. 2015.(Presentation by: Stephen Wang )
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Resources:
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6
(Feb 20th, 2020) |
- Readout - Content Extraction Group Presentations
- Individual Presentations - week 5 papers
- Assignment 1 questions
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- Tika in Action, Chapter 6
- Gowda, Thamme, and Chris A. Mattmann. "Clustering Web Pages Based on Structure and Style Similarity (Application Paper)." Information Reuse and Integration (IRI), 2016 IEEE 17th International Conference on. IEEE, 2016.(Presentation by: Yueming Gao)
- Anquetil, Nicolas, and Timothy Lethbridge. File clustering using naming conventions for legacy systems. Proceedings of the 1997 conference of the Centre for Advanced Studies on Collaborative research. IBM Press, 1997.
- Swierk, Edward, et al. "The Roma personal metadata service." Mobile Networks and Applications 7.5 (2002): 407-418.
- Karypis, Michael Steinbach George, Vipin Kumar, and Michael Steinbach. "A comparison of document clustering techniques." KDD workshop on Text Mining. 2000.(Presented by: Monali Rajendra Patil)
- Marchionini, Gary. "Exploratory search: from finding to understanding." Communications of the ACM 49.4 (2006): 41-46. (Presentation by: Rachel Maltz)
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7
(Feb 27th, 2020) |
- Video - Understanding Metadata TedX talk
- Understanding Metadata
- Information Clustering
- Week 6 Individual Presentations
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- Tika in Action, Chapter 7
- Koehn, Philipp, et al. "Moses: Open source toolkit for statistical machine translation." Proceedings of the 45th annual meeting of the ACL on interactive poster and demonstration sessions. Association for Computational Linguistics, 2007.(Presentation by: Chi-Chuan Lin)
- Post, Matt, et al. "Joshua 5.0: Sparser, better, faster, server." Proceedings of the Eighth Workshop on Statistical Machine Translation. 2013.(Presentation by: You Yao)
- Lins, Rafael Dueire, and Paulo Gonçalves. Automatic language identification of written texts. Proceedings of the 2004 ACM symposium on Applied computing. ACM, 2004.(Presentation by: Daniel Girardo)
- Papineni, Kishore, et al. "BLEU: a method for automatic evaluation of machine translation." Proceedings of the 40th annual meeting on association for computational linguistics. Association for Computational Linguistics, 2002. (Presentation by: Ruojia Xu)
- Bahdanau, Dzmitry, Kyunghyun Cho, and Yoshua Bengio. "Neural machine translation by jointly learning to align and translate." arXiv preprint arXiv:1409.0473 (2014).
- Tromp, Erik, and Mykola Pechenizkiy. "Graph-based n-gram language identification on short texts." Proc. 20th Machine Learning conference of Belgium and The Netherlands. 2011.
- Lopez-Moreno, Ignacio, et al. "Automatic language identification using deep neural networks." Acoustics, Speech and Signal Processing (ICASSP), 2014 IEEE International Conference on. IEEE, 2014.(Presentation by: Ye Ji Shin)
- Bertoldi, Nicola, et al. "MMT: New open source MT for the translation industry." Proceedings of The 20th Annual Conference of the European Association for Machine Translation (EAMT). 2017.(Presented by: Rhushabh Vaghela)
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Resources:
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8
(March 5th, 2020) |
- Exam Review
- Assignment 2
- Video - Linguistic Forensics
- Language Identification
- Week 7 Individual Presentations
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- Tika in Action, Chapter 8
- Tjong Kim Sang, Erik F., and Fien De Meulder. "Introduction to the CoNLL-2003 shared task: Language-independent named entity recognition." Proceedings of the seventh conference on Natural language learning at HLT-NAACL 2003-Volume 4. Association for Computational Linguistics, 2003.
- Nadeau, David, and Satoshi Sekine. "A survey of named entity recognition and classification." Lingvisticae Investigationes 30.1 (2007): 3-26.(Presentation by: Reid Pattis)
- Ritter, Alan, Sam Clark, and Oren Etzioni. "Named entity recognition in tweets: an experimental study." Proceedings of the Conference on Empirical Methods in Natural Language Processing. Association for Computational Linguistics, 2011. (Presentation by: Yu Ji)
- Mattmann, Chris A., and Madhav Sharan. "An automatic approach for discovering and geocoding locations in domain-specific web data." Proceedings of the 2016 IEEE 17th International Conference on Information Reuse and Integration (IRI’16). 2016.
- Khodak, Mikhail, Nikunj Saunshi, and Kiran Vodrahalli. "A Large Self-Annotated Corpus for Sarcasm." arXiv preprint arXiv:1704.05579 (2017).(Presentation by: Yixing Chai)
- Hutto, Clayton J., and Eric Gilbert. "Vader: A parsimonious rule-based model for sentiment analysis of social media text." Eighth international AAAI conference on weblogs and social media. 2014.(Presented by: Li Yifei)
- Geyer, Kelly, et al. "Named Entity Recognition in 140 Characters or Less." # Microposts. 2016.
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Resources:
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9
(March 12th, 2020) |
- Exam
- Discussion on setting up repeatable environment for assignments (Yash Shah - WebEx)
- Spillover lecture - Language Identification
- Individual Presentations
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Location: RTH 217 |
Resources:
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10
(March 19th, 2020) |
No Class This Week |
No Class This Week - Spring Break (March 15-22, 2020) |
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11
(March 26th, 2020) |
- Individual Presentations - Week 8 Freya Chai, and Week 11 presentations)
- Discussion on Named Entity Recognition
- Hadoop Spark and Tika: Large Scale Content Detection and Analysis
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- Tika in Action, Chapter 9
- Dean, Jeffrey, and Sanjay Ghemawat. MapReduce: simplified data processing on large clusters. Communications of the ACM 51.1 (2008): 107-113.(Presentation by: Xiangyi Qi )
- Zaharia, Matei, et al. Spark: cluster computing with working sets.Proceedings of the 2nd USENIX conference on Hot topics in cloud computing. Vol. 10. 2010.
- Elsayed, Tamer, Jimmy Lin, and Douglas W. Oard. "Pairwise document similarity in large collections with MapReduce." Proceedings of the 46th Annual Meeting of the Association for Computational Linguistics on Human Language Technologies: Short Papers. Association for Computational Linguistics, 2008.(Presentation by: Yelei Wu)
- M. Bernaschi, M. Cianfriglia, A. Di Marco, A. Sabellico, G. Me, G. Carbone, G. Totaro. Forensic Disk Image Indexing and Search in an HPC environment. IEEE International Conference on High Performance Computing & Simulation (HPCS), 2014.
- Meusel, Robert, Peter Mika, and Roi Blanco. "Focused crawling for structured data." Proceedings of the 23rd ACM International Conference on Conference on Information and Knowledge Management. ACM, 2014.(Presented by: Jiabo He)
- Niu, Feng, et al. "DeepDive: Web-scale Knowledge-base Construction using Statistical Learning and Inference." VLDS 12 (2012): 25-28.
- Mattmann, C. A., Oh, J. H., Palsulich, T., McGibbney, L. J., Gil, Y., & Ratnakar, V. (2015, November). DRAT: An Unobtrusive, Scalable Approach to Large Scale Software License Analysis. In Automated Software Engineering Workshop (ASEW), 2015 30th IEEE/ACM International Conference on (pp. 97-101). IEEE.
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Resources:
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12
(April 2, 2020) |
- Assignment 3 - Introduction
- Readout - Named Entity Recognition Group Presentations
- Open Source Content Detection Technologies
- Individual Presentations - week 12
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- Tika in Action, Chapter 10
- Białecki, Andrzej, et al. "Apache lucene 4." SIGIR 2012 workshop on open source information retrieval. 2012.
- Turtle, Howard, Yatish Hegde, and S. Rowe. "Yet another comparison of lucene and indri performance." SIGIR 2012 Workshop on Open Source Information Retrieval. 2012.
- Bontcheva, Kalina, et al. "TwitIE: An Open-Source Information Extraction Pipeline for Microblog Text." RANLP. 2013.(Presentation by: Zixin Zheng)
- Cunningham, Hamish. "GATE, a general architecture for text engineering." Computers and the Humanities 36.2 (2002): 223-254.
- Atserias, Jordi, et al. "FreeLing 1.3: Syntactic and semantic services in an open-source NLP library." Proceedings of LREC. Vol. 6. 2006.
- Manning, Christopher D., et al. "The stanford corenlp natural language processing toolkit." ACL (System Demonstrations). 2014.(Presentation by: Guangrui Cai)
- Savova, Guergana K., et al. "Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications." Journal of the American Medical Informatics Association 17.5 (2010): 507-513.
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Resources:
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13
(April 9th, 2020) |
- Ted Talk (click link in resources)
- Evaluating Content Detection
- Walkthrough of Polar Deep Insights
- Individual Presentations - week 13 presentations - Andrew Johnson, Lei Gao, Andrew Jin
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- Tika in Action, Chapter 11
- Nowell, Lucy Terry, et al. "Visualizing search results: some alternatives to query-document similarity." Proceedings of the 19th annual international ACM SIGIR conference on Research and development in information retrieval. ACM, 1996. (Presentation by: Andrew Johnson)
- Shneiderman, Ben. "The eyes have it: A task by data type taxonomy for information visualizations." Visual Languages, 1996. Proceedings., IEEE Symposium on. IEEE, 1996.(Presentation by: Lei Gao)
- Gottron, Thomas. "Evaluating content extraction on HTML documents." Proceedings of the 2nd International Conference on Internet Technologies and Applications (ITA’07). 2007.
- Leuski, Anton. "Evaluating document clustering for interactive information retrieval." Proceedings of the tenth international conference on Information and knowledge management. ACM, 2001.
- Bailey, Peter, et al. "Evaluating search systems using result page context." Proceedings of the third symposium on Information interaction in context. ACM, 2010.(Presentation by: Andrew Jin)
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Resources:
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14
(April 16th, 2020) |
- Group Readouts on Evaluating Content Detection and Analysis
- Lecture on NoSQL
- Lecture on SciSpark
- Individual Presentations – week 14 - Resherle Verna, Yue Hao
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- Palamuttam, Rahul, et al. "SciSpark: Applying in-memory distributed computing to weather event detection and tracking." Big Data (Big Data), 2015 IEEE International Conference on. IEEE, 2015.(Presentation by: Resherle Verna)
- Leavitt, Neal. "Will NoSQL databases live up to their promise?." Computer 43.2 (2010).
- Stonebraker, Michael. "SQL databases v. NoSQL databases." Communications of the ACM 53.4 (2010): 10-11.(Presentation by: Yue Hao)
- Stonebraker, Michael. "Stonebraker on NoSQL and enterprises." Communications of the ACM 54.8 (2011): 10-11.
- Rafique, Ansar, et al. "On the performance impact of data access middleware for nosql data stores." IEEE Transactions on Cloud Computing (2015).
- Moniruzzaman, A. B. M., and Syed Akhter Hossain. "Nosql database: New era of databases for big data analytics-classification, characteristics and comparison." arXiv preprint arXiv:1307.0191 (2013).
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Resources:
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15
(April 23rd, 2020) |
- Video - Scientific Data: Water and Snow in the Western US
- Searching Scientific Datasets
- Scientific Data Processing (Airborne Snow Observatory)
- Week 15 Individual Presentations - Abouelnaga Raghda, Eyuphan Koc, Lingzhi Zhang
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- Tika in Action, Chapter 12 - 14
- C. Mattmann, D. Freeborn, D. Crichton, B. Foster, A. Hart, D. Woollard, S. Hardman, P. Ramirez, S. Kelly, A. Y. Chang, C. E. Miller. A Reusable Process Control System Framework for the Orbiting Carbon Observatory and NPP Sounder PEATE missions. In Proceedings of the 3rd IEEE Intl Conference on Space Mission Challenges for Information Technology (SMC-IT 2009), pp. 165-172, July 19 - 23, 2009.
- Wilkinson, Mark D., et al. "The FAIR Guiding Principles for scientific data management and stewardship." Scientific data 3 (2016): 160018.(Presentation by: Abouelnaga Raghda)
- Buneman, Peter, et al. "Archiving scientific data." ACM Transactions on Database Systems (TODS) 29.1 (2004): 2-42.
- Fox, Peter, and James Hendler. "Changing the equation on scientific data visualization." Science 331.6018 (2011): 705-708.(Presentation by: Eyuphan Koc )
- Plale, Beth, et al. "Active management of scientific data." IEEE Internet Computing 9.1 (2005): 27-34.
- Gray, Jim, et al. "Scientific data management in the coming decade." ACM SIGMOD Record 34.4 (2005): 34-41. (Presented by: Lingzhi Zhang)
- Ailamaki, Anastasia, Verena Kantere, and Debabrata Dash. "Managing scientific data." Communications of the ACM 53.6 (2010): 68-78.
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Resources:
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16
(April 30th, 2020) |
- Big Data with an Eye Towards the Future: Discussion
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